Package: bdc 1.1.5
bdc: Biodiversity Data Cleaning
It brings together several aspects of biodiversity data-cleaning in one place. 'bdc' is organized in thematic modules related to different biodiversity dimensions, including 1) Merge datasets: standardization and integration of different datasets; 2) Pre-filter: flagging and removal of invalid or non-interpretable information, followed by data amendments; 3) Taxonomy: cleaning, parsing, and harmonization of scientific names from several taxonomic groups against taxonomic databases locally stored through the application of exact and partial matching algorithms; 4) Space: flagging of erroneous, suspect, and low-precision geographic coordinates; and 5) Time: flagging and, whenever possible, correction of inconsistent collection date. In addition, it contains features to visualize, document, and report data quality – which is essential for making data quality assessment transparent and reproducible. The reference for the methodology is Bruno et al. (2022) <doi:10.1111/2041-210X.13868>.
Authors:
bdc_1.1.5.tar.gz
bdc_1.1.5.zip(r-4.5)bdc_1.1.5.zip(r-4.4)bdc_1.1.5.zip(r-4.3)
bdc_1.1.5.tgz(r-4.4-any)bdc_1.1.5.tgz(r-4.3-any)
bdc_1.1.5.tar.gz(r-4.5-noble)bdc_1.1.5.tar.gz(r-4.4-noble)
bdc_1.1.5.tgz(r-4.4-emscripten)bdc_1.1.5.tgz(r-4.3-emscripten)
bdc.pdf |bdc.html✨
bdc/json (API)
NEWS
# Install 'bdc' in R: |
install.packages('bdc', repos = c('https://bdc-proj.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/brunobrr/bdc/issues
Last updated 13 hours agofrom:97d51175e9 (on master). Checks:OK: 1 ERROR: 6. Indexed: no.
Target | Result | Date |
---|---|---|
Doc / Vignettes | OK | Oct 30 2024 |
R-4.5-win | ERROR | Oct 30 2024 |
R-4.5-linux | ERROR | Oct 30 2024 |
R-4.4-win | ERROR | Oct 30 2024 |
R-4.4-mac | ERROR | Oct 30 2024 |
R-4.3-win | ERROR | Oct 30 2024 |
R-4.3-mac | ERROR | Oct 30 2024 |
Exports:%>%bdc_basisOfRecords_notStandardbdc_clean_namesbdc_coordinates_country_inconsistentbdc_coordinates_emptybdc_coordinates_from_localitybdc_coordinates_outOfRangebdc_coordinates_precisionbdc_coordinates_transposedbdc_country_from_coordinatesbdc_country_standardizedbdc_create_figuresbdc_create_reportbdc_eventDate_emptybdc_filter_out_flagsbdc_filter_out_namesbdc_query_names_taxadbbdc_quickmapbdc_scientificName_emptybdc_standardize_datasetsbdc_summary_colbdc_year_from_eventDatebdc_year_outOfRange
Dependencies:askpassbase64encBHbitbit64blobbslibcachemclassclassIntclicliprcodetoolscolorspacecontentidCoordinateCleanercpp11crayoncrosstalkcrulcurldata.tableDBIdbplyrdigestdoParalleldplyrDTduckdbe1071evaluatefansifarverfastmapfontawesomeforeachfsgenericsgeosphereggplot2gluegtableherehighrhmshtmltoolshtmlwidgetshttpcodehttpuvhttrisobanditeratorsjquerylibjsonliteKernSmoothknitrlabelinglaterlatticelazyevallifecyclemagrittrMASSMatrixmemoisemgcvmimemunsellnlmeoaiopensslpillarpkgconfigplyrprettyunitsprogresspromisesproxypurrrqsR6RApiSerializerappdirsRColorBrewerRcppRcppParallelreadrrgbifrgnparserrlangrmarkdownrnaturalearthrprojroots2sassscalessfspstringdiststringfishstringistringrsystaxadbterratibbletidyrtidyselecttinytextriebeardtzdbunitsurltoolsutf8vctrsviridisLitevroomwhiskerwithrwkxfunxml2yaml
Pre-filter
Rendered fromprefilter.Rmd
usingknitr::rmarkdown
on Oct 30 2024.Last update: 2023-09-08
Started: 2021-03-18
Space
Rendered fromspace.Rmd
usingknitr::rmarkdown
on Oct 30 2024.Last update: 2022-04-21
Started: 2021-03-23
Standardization and integration of different datasets
Rendered fromintegrate_datasets.Rmd
usingknitr::rmarkdown
on Oct 30 2024.Last update: 2022-05-24
Started: 2021-03-23
Taxonomy
Rendered fromtaxonomy.Rmd
usingknitr::rmarkdown
on Oct 30 2024.Last update: 2022-05-24
Started: 2021-03-23
Time
Rendered fromtime.Rmd
usingknitr::rmarkdown
on Oct 30 2024.Last update: 2022-04-21
Started: 2021-03-23