Package: bdc 1.1.6

bdc: Biodiversity Data Cleaning
It brings together several aspects of biodiversity data-cleaning in one place. 'bdc' is organized in thematic modules related to different biodiversity dimensions, including 1) Merge datasets: standardization and integration of different datasets; 2) pre-filter: flagging and removal of invalid or non-interpretable information, followed by data amendments; 3) taxonomy: cleaning, parsing, and harmonization of scientific names from several taxonomic groups against taxonomic databases locally stored through the application of exact and partial matching algorithms; 4) space: flagging of erroneous, suspect, and low-precision geographic coordinates; and 5) time: flagging and, whenever possible, correction of inconsistent collection date. In addition, it contains features to visualize, document, and report data quality – which is essential for making data quality assessment transparent and reproducible. The reference for the methodology is Ribeiro and colleagues (2022) <doi:10.1111/2041-210X.13868>.
Authors:
bdc_1.1.6.tar.gz
bdc_1.1.6.zip(r-4.7-any)bdc_1.1.6.zip(r-4.6-any)bdc_1.1.6.zip(r-4.5-any)
bdc_1.1.6.tgz(r-4.6-any)bdc_1.1.6.tgz(r-4.5-any)
bdc_1.1.6.tar.gz(r-4.7-any)bdc_1.1.6.tar.gz(r-4.6-any)
bdc_1.1.6.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
bdc/json (API)
| # Install 'bdc' in R: |
| install.packages('bdc', repos = c('https://bdc-proj.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/brunobrr/bdc/issues
Pkgdown/docs site:https://brunobrr.github.io
Last updated from:77672a7826 (on master). Checks:7 WARNING, 2 OK. Indexed: no.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel | WARNING | 250 | ||
| source / vignettes | OK | 236 | ||
| linux-release | WARNING | 198 | ||
| macos-release | WARNING | 236 | ||
| macos-oldrel | WARNING | 238 | ||
| windows-devel | WARNING | 201 | ||
| windows-release | WARNING | 197 | ||
| windows-oldrel | WARNING | 198 | ||
| wasm-release | OK | 150 |
Exports:%>%bdc_basisOfRecords_notStandardbdc_clean_namesbdc_coordinates_country_inconsistentbdc_coordinates_emptybdc_coordinates_from_localitybdc_coordinates_outOfRangebdc_coordinates_precisionbdc_coordinates_transposedbdc_country_from_coordinatesbdc_country_standardizedbdc_create_figuresbdc_create_reportbdc_eventDate_emptybdc_filter_out_flagsbdc_filter_out_namesbdc_query_names_taxadbbdc_quickmapbdc_scientificName_emptybdc_standardize_datasetsbdc_summary_colbdc_year_from_eventDatebdc_year_outOfRange
Dependencies:askpassbase64encbitbit64blobbslibcachemclassclassIntclicliprcodetoolsCoordinateCleanercpp11crayoncrosstalkcrulcurldata.tableDBIdbplyrdigestdoParalleldplyrDTduckdbe1071evaluatefarverfastmapfontawesomeforeachfsgenericsgeosphereggplot2gluegtableherehighrhmshtmltoolshtmlwidgetshttpcodehttrisobanditeratorsjquerylibjsonliteKernSmoothknitrlabelinglaterlazyevallifecyclemagrittrmemoisemimeoaiopensslotelpillarpkgconfigplyrprettyunitsprogresspromisesproxypurrrqs2R6rappdirsRColorBrewerRcppRcppParallelreadrrgbifrgnparserrlangrmarkdownrnaturalearthrprojroots2S7sassscalessfstringdiststringfishstringistringrsystaxadbterratibbletidyrtidyselecttinytextriebeardtzdbunitsurltoolsutf8vctrsviridisLitevroomwhiskerwithrwkxfunxml2yaml